Contents:
topiary
topiary.draw
topiary.draw.ancestor_data
topiary.draw.core
topiary.draw.prettytree
topiary.draw.species
topiary.draw.tree
topiary.generax
topiary.generax.reconcile
topiary.io
topiary.io.alignments
topiary.io.dataframe
topiary.io.paralog_patterns
topiary.io.seed
topiary.io.tree
topiary.muscle
topiary.muscle.muscle
topiary.ncbi
topiary.ncbi.blast
topiary.ncbi.blast.local
topiary.ncbi.blast.make
topiary.ncbi.blast.merge
topiary.ncbi.blast.ncbi
topiary.ncbi.blast.read
topiary.ncbi.blast.recip
topiary.ncbi.blast.util
topiary.ncbi.entrez
topiary.ncbi.entrez.download
topiary.ncbi.entrez.proteome
topiary.ncbi.entrez.sequences
topiary.ncbi.entrez.taxid
topiary.opentree
topiary.opentree.ott
topiary.opentree.tree
topiary.opentree.util
topiary.pastml
topiary.pastml.pastml
topiary.pipeline
topiary.pipeline.alignment_to_ancestors
topiary.pipeline.bootstrap_reconcile
topiary.pipeline.seed_to_alignment
topiary.quality
topiary.quality.alignment
topiary.quality.polish
topiary.quality.redundancy
topiary.quality.shrink
topiary.quality.taxonomic
topiary.raxml
topiary.raxml.ancestors
topiary.raxml.bootstrap
topiary.raxml.convergence
topiary.raxml.model
topiary.raxml.tree
topiary.reports
topiary.reports.cards
topiary.reports.cards.ancestor
topiary.reports.cards.asr_tree
topiary.reports.cards.duplications
topiary.reports.cards.input
topiary.reports.cards.model
topiary.reports.cards.param
topiary.reports.cards.species_tree
topiary.reports.elements
topiary.reports.reports
topiary.util
topiary.util.create_nicknames