Python Module Index

t


	t
	`topiary`
	`topiary.cli_scripts`
	`topiary.cli_scripts.alignment_to_ancestors`
	`topiary.cli_scripts.bootstrap_reconcile`
	`topiary.cli_scripts.check_installed`
	`topiary.cli_scripts.create_report`
	`topiary.cli_scripts.dataframe_from_fasta`
	`topiary.cli_scripts.fasta_into_dataframe`
	`topiary.cli_scripts.seed_to_alignment`
	`topiary.draw`
	`topiary.draw.ancestor_data`
	`topiary.draw.core`
	`topiary.draw.prettytree`
	`topiary.draw.species`
	`topiary.draw.tree`
	`topiary.generax`
	`topiary.generax.reconcile`
	`topiary.io`
	`topiary.io.alignments`
	`topiary.io.dataframe`
	`topiary.io.paralog_patterns`
	`topiary.io.seed`
	`topiary.io.tree`
	`topiary.muscle`
	`topiary.muscle.muscle`
	`topiary.ncbi`
	`topiary.ncbi.blast`
	`topiary.ncbi.blast.local`
	`topiary.ncbi.blast.make`
	`topiary.ncbi.blast.merge`
	`topiary.ncbi.blast.ncbi`
	`topiary.ncbi.blast.read`
	`topiary.ncbi.blast.recip`
	`topiary.ncbi.blast.util`
	`topiary.ncbi.entrez`
	`topiary.ncbi.entrez.download`
	`topiary.ncbi.entrez.proteome`
	`topiary.ncbi.entrez.sequences`
	`topiary.ncbi.entrez.taxid`
	`topiary.opentree`
	`topiary.opentree.ott`
	`topiary.opentree.tree`
	`topiary.opentree.util`
	`topiary.pastml`
	`topiary.pastml.pastml`
	`topiary.pipeline`
	`topiary.pipeline.alignment_to_ancestors`
	`topiary.pipeline.bootstrap_reconcile`
	`topiary.pipeline.seed_to_alignment`
	`topiary.quality`
	`topiary.quality.alignment`
	`topiary.quality.polish`
	`topiary.quality.redundancy`
	`topiary.quality.shrink`
	`topiary.quality.taxonomic`
	`topiary.raxml`
	`topiary.raxml.ancestors`
	`topiary.raxml.bootstrap`
	`topiary.raxml.convergence`
	`topiary.raxml.model`
	`topiary.raxml.tree`
	`topiary.reports`
	`topiary.reports.cards`
	`topiary.reports.cards.ancestor`
	`topiary.reports.cards.asr_tree`
	`topiary.reports.cards.duplications`
	`topiary.reports.cards.input`
	`topiary.reports.cards.model`
	`topiary.reports.cards.param`
	`topiary.reports.cards.species_tree`
	`topiary.reports.elements`
	`topiary.reports.reports`
	`topiary.util`
	`topiary.util.create_nicknames`