topiary.pipeline
========================



.. automodule:: topiary.pipeline
   :members:
   :undoc-members:
   :show-inheritance:


topiary.pipeline.alignment\_to\_ancestors
------------------------------------------------

.. automodule:: topiary.pipeline.alignment_to_ancestors
   :members:
   :undoc-members:
   :show-inheritance:

topiary.pipeline.bootstrap\_reconcile
--------------------------------------------

.. automodule:: topiary.pipeline.bootstrap_reconcile
   :members:
   :undoc-members:
   :show-inheritance:

topiary.pipeline.seed\_to\_alignment
-------------------------------------------

.. automodule:: topiary.pipeline.seed_to_alignment
   :members:
   :undoc-members:
   :show-inheritance: